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lefse (linear discriminant analysis (lda) effect size  (RStudio)

 
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    RStudio lefse (linear discriminant analysis (lda) effect size
    Lefse (Linear Discriminant Analysis (Lda) Effect Size, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/lefse+(linear+discriminant+analysis+(lda)+effect+size/lefse++linear+discriminant+analysis++lda++effect+size/pmc10976216-90-0-29
    Average 90 stars, based on 1 article reviews
    lefse (linear discriminant analysis (lda) effect size - by Bioz Stars, 2026-09
    90/100 stars

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    Article Title: Active Microbiota of Penaeus stylirostris Larvae: Partially Shaped via Vertical and Horizontal Transmissions and Larval Ontogeny
    Article Snippet: LEfSe (Linear Discriminant Analysis (LDA) effect size) [ ] was performed to distinguish microbial biomarkers at the genus and ASV phylogenetic level using the microbiomeMarker package [ ] in RStudio, with a threshold set at 4.



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    Taxonomic features of the faecal microbiota of patients with PTB and controls. Comparisons of the relative abundances of intestinal microbiota between the PTB and HCs groups were conducted at the phylum (A), family (B) and genus (C) level; # P < 0.05. A <t>LEfSe</t> analysis identified the differentially abundant taxa between the PTB and HCs groups. The HC‐enriched taxa are indicated with a negative <t>LDA</t> score (red), and the taxa enriched in the patients with PTB are characterized by a positive score (green). Only taxa with an LDA threshold greater than 4.0 are displayed (D). LDA, linear discriminant analysis. The circular cladogram was derived from the LEfSe analysis and showed the relationship between the most differentially abundant taxa in the patients with PTB (green) and the HCs (red). HCs, healthy controls; LEfSe, linear discriminant analysis effect size; PTB, pulmonary tuberculosis.
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    Taxonomic features of the faecal microbiota of patients with PTB and controls. Comparisons of the relative abundances of intestinal microbiota between the PTB and HCs groups were conducted at the phylum (A), family (B) and genus (C) level; # P < 0.05. A LEfSe analysis identified the differentially abundant taxa between the PTB and HCs groups. The HC‐enriched taxa are indicated with a negative LDA score (red), and the taxa enriched in the patients with PTB are characterized by a positive score (green). Only taxa with an LDA threshold greater than 4.0 are displayed (D). LDA, linear discriminant analysis. The circular cladogram was derived from the LEfSe analysis and showed the relationship between the most differentially abundant taxa in the patients with PTB (green) and the HCs (red). HCs, healthy controls; LEfSe, linear discriminant analysis effect size; PTB, pulmonary tuberculosis.

    Journal: Microbial Biotechnology

    Article Title: Characteristic gut microbiota and metabolic changes in patients with pulmonary tuberculosis

    doi: 10.1111/1751-7915.13761

    Figure Lengend Snippet: Taxonomic features of the faecal microbiota of patients with PTB and controls. Comparisons of the relative abundances of intestinal microbiota between the PTB and HCs groups were conducted at the phylum (A), family (B) and genus (C) level; # P < 0.05. A LEfSe analysis identified the differentially abundant taxa between the PTB and HCs groups. The HC‐enriched taxa are indicated with a negative LDA score (red), and the taxa enriched in the patients with PTB are characterized by a positive score (green). Only taxa with an LDA threshold greater than 4.0 are displayed (D). LDA, linear discriminant analysis. The circular cladogram was derived from the LEfSe analysis and showed the relationship between the most differentially abundant taxa in the patients with PTB (green) and the HCs (red). HCs, healthy controls; LEfSe, linear discriminant analysis effect size; PTB, pulmonary tuberculosis.

    Article Snippet: Metastat‐based and linear discriminant analysis (LDA) effect size (LEfSe) analyses were performed to identify different distributions of the faecal microbiota.

    Techniques: Derivative Assay